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基于微卫星分子标记的福建省灰茶尺蠖遗传分化分析

Microsatellite Markers-based Genetic Differentiation of Ectropis grisescens Populations in Fujian Province

  • 摘要:
    目的 灰茶尺蠖Ectropis grisescens Warren作为茶园常见的食叶性害虫,广泛分布于福建省各产茶区并造成了一定的经济损失。开发并设计关于灰茶尺蠖微卫星位点的引物,以及对福建省不同地理种群的遗传差异进行研究,以了解其种群发生规律,为其可持续防控技术的开发提供参考。
    方法 应用MISA软件检索灰茶尺蠖基因组和转录组序列,并对位点分布规律进行整理描述。再通过Primer 3和TBtools软件设计引物并进行模拟扩增,最终使用3种引物荧光标记法得到5对具有多态性的微卫星位点,并对福建省4个灰茶尺蠖地理种群的分化程度进行分析。
    结果 灰茶尺蠖SSR位点数量巨大,重复类型较多,重复基元均呈现明显的AT偏向性。4个地理种群在5个位点中均有部分位点存在显著偏离哈迪-温伯格平衡现象。
    结论 4个地理种群中,泉州种群分化差异最大,宁德种群有明显分化,三明种群与南平种群之间差异较小。

     

    Abstract:
    Objective Ectropis grisescens Warren, a common leaf-eating pest in tea plantations, was widely distributed in various tea producing cities in Fujian Province and caused certain economic losses. To develop and design primers for microsatellite loci of grey tea inchworm, and to study the genetic differences of different geographical populations in Fujian Province, in order to understand their population occurrence rules and provide references for the development of sustainable prevention and control technologies.
    Method MISA was used to search the genome and transcriptome sequences of E. grisescens Warren for loci distribution. Primer 3 and TBtools were employed to design the primers for the simulated amplification. The three-primer fluorescence labeling method was applied to obtain the pairs of polymorphic microsatellite loci for differentiating the specimens of 4 population groups collected in the province.
    Result The repeat types of microsatellite loci in E. grisescens were numerous, and the repeat motifs showed apparent AT bias. The 4 population groups significantly deviated from the Hardy-Weinberg equilibrium on part of the 5 identified pairs of polymorphic loci.
    Conclusion The genetic deviation in the E. grisescens population at Quanzhou was the greatest and that at Ningde significant among the 4 groups. There was no significant difference between those at Sanming and Nanping.

     

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