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茶树COBRA基因家族全基因组鉴定及表达分析

Genome-wide Identification andExpressions of COBRA Family in Camelliasinensis

  • 摘要: COBRA基因编码糖基磷脂酰肌醇锚定蛋白,是次生壁加厚和纤维素含量的调节因子,对植物生长、纤维素含量等有重要作用。本文通过对茶树基因组数据进行分析,成功的从中鉴定到COBRA基因,并对该基因家族成员的蛋白理化性质、亚细胞定位、进化关系、保守结构域、染色体定位等进行生物信息学分析,同时分析了茶树COBRA 成员在PEG诱导的干旱胁迫、茉莉酸甲酯处理、盐胁迫、冷胁迫处理中的转录组数据,最后对茶树进行茉莉酸甲酯处理,基于荧光定量PCR技术的表达水平验证。结果表明:茶树COBRA基因有16个家族成员,相对分子质量24807.70 ~74813.12 ,等电点5.43~9.14,亚细胞定位显示在细胞膜和细胞核外;根据系统进化树将茶树COBRA基因家族分为5类;保守结构域和motif分析发现相同亚家族的基因结构,保守结构域都属于COBRA基因家族;基因表达分析显示COBRA基因在不同茶树部位和胁迫的表达量有不同差异,说明茶树COBRA基因广泛参与茶树生长发育和非生物胁迫响应。实时荧光定量PCR显示经茉莉酸甲酯处理后,3个CsCOBRA基因表达量趋势大致与转录组数据一致,本研究将为进一步开展茶树COBRA基因家族的功能验证和抗逆作用机理研究等提供参考。

     

    Abstract: A regulator of secondary wall thickening and cellulose content in plants, COBRA encodes glycosylphosphatidylinositol-anchored protein and is closely associated with the physiological and chemical functions of a tea plant. From the available data on Camellia sinensis genome, this article identified the specific genes and analyzed by bioinformatics the physicochemical properties, subcellular localization, evolutionary relationship, conserved domain, and chromosome localization of the gene family. The effects brought about by COBRAs on the PEG induced stresses, such as drought, methyl jasmonate treatment, and salt, on tea plants were studied. And the gene expression in the methyl jasmonate treated plants was verified by fluorescent quantitative PCR. The 16 members identified in the COBRA family had relative molecular weights ranging from 24,807.70 to 74,813.12 kDa, isoelectric points from pH 5.43 to 9.14, and subcellular localization in the cell membrane and outside nucleus. The phylogenetic tree of the family divided the members into 5 distinct groups. All conservative domains and motifs of a gene in a same subfamily belonged to the COBRA family. The COBRA expressions differed in varied plant parts or under different stresses. Thus, the genes appeared to be involved in the functions of the plant growth and development as well as the abiotic stress response. The real time fluorescent quantitative PCR on the genes of tea plants treated by methyl jasmonate displayed expression variations among the 3 CsCOBRAs to generally concur with the transcriptome data.

     

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